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__copyright__ = """
Copyright (C) 2015 Andreas Kloeckner
Copyright (C) 2021 University of Illinois Board of Trustees
"""
__license__ = """
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in
all copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
THE SOFTWARE.
"""
import numpy as np
import numpy.linalg as la
from arraycontext import pytest_generate_tests_for_array_contexts
from meshmode.discretization.poly_element import (
InterpolatoryEdgeClusteredGroupFactory,
QuadratureGroupFactory,
)
from meshmode.dof_array import flat_norm
from meshmode.mesh import TensorProductElementGroup
from pytools.obj_array import flat_obj_array
from grudge import dof_desc, geometry, op
from grudge.array_context import PytestPyOpenCLArrayContextFactory
from grudge.discretization import make_discretization_collection
pytest_generate_tests = pytest_generate_tests_for_array_contexts(
[PytestPyOpenCLArrayContextFactory])
# {{{ mass operator trig integration
@pytest.mark.parametrize("ambient_dim", [1, 2, 3])
@pytest.mark.parametrize("discr_tag", [dof_desc.DISCR_TAG_BASE,
dof_desc.DISCR_TAG_QUAD])
def test_mass_mat_trig(actx_factory, ambient_dim, discr_tag):
"""Check the integral of some trig functions on an interval using the mass
actx = actx_factory()
nel_1d = 16
a = -4.0 * np.pi
b = +9.0 * np.pi
true_integral = 13*np.pi/2 * (b - a)**(ambient_dim - 1)
from meshmode.discretization.poly_element import QuadratureSimplexGroupFactory
dd_quad = dof_desc.DOFDesc(dof_desc.DTAG_VOLUME_ALL, discr_tag)
if discr_tag is dof_desc.DISCR_TAG_BASE:
discr_tag_to_group_factory = {}
discr_tag_to_group_factory = {
discr_tag: QuadratureSimplexGroupFactory(order=2*order)
}
mesh = mgen.generate_regular_rect_mesh(
a=(a,)*ambient_dim, b=(b,)*ambient_dim,
nelements_per_axis=(nel_1d,)*ambient_dim, order=1)
dcoll = make_discretization_collection(
actx, mesh, order=order,
discr_tag_to_group_factory=discr_tag_to_group_factory
)
def f(x):
return actx.np.sin(x[0])**2
volm_disc = dcoll.discr_from_dd(dof_desc.DD_VOLUME_ALL)
x_volm = actx.thaw(volm_disc.nodes())
f_volm = f(x_volm)
ones_volm = volm_disc.zeros(actx) + 1
quad_disc = dcoll.discr_from_dd(dd_quad)
x_quad = actx.thaw(quad_disc.nodes())
f_quad = f(x_quad)
ones_quad = quad_disc.zeros(actx) + 1
mop_1 = op.mass(dcoll, dd_quad, f_quad)
num_integral_1 = op.nodal_sum(
dcoll, dof_desc.DD_VOLUME_ALL, ones_volm * mop_1
err_1 = abs(num_integral_1 - true_integral)
assert err_1 < 2e-9, err_1
mop_2 = op.mass(dcoll, dd_quad, ones_quad)
num_integral_2 = op.nodal_sum(dcoll, dof_desc.DD_VOLUME_ALL, f_volm * mop_2)
err_2 = abs(num_integral_2 - true_integral)
assert err_2 < 2e-9, err_2
if discr_tag is dof_desc.DISCR_TAG_BASE:
# NOTE: `integral` always makes a square mass matrix and
# `QuadratureSimplexGroupFactory` does not have a `mass_matrix` method.
num_integral_3 = op.nodal_sum(dcoll, dof_desc.DD_VOLUME_ALL, f_quad * mop_2)
err_3 = abs(num_integral_3 - true_integral)
assert err_3 < 5e-10, err_3
# {{{ mass operator on surface
def _ellipse_surface_area(radius, aspect_ratio):
# https://docs.scipy.org/doc/scipy/reference/generated/scipy.special.ellipe.html
eccentricity = 1.0 - (1/aspect_ratio)**2
if abs(aspect_ratio - 2.0) < 1.0e-14:
# NOTE: hardcoded value so we don't need scipy for the test
ellip_e = 1.2110560275684594
else:
from scipy.special import ellipe # pylint: disable=no-name-in-module
ellip_e = ellipe(eccentricity)
return 4.0 * radius * ellip_e
def _spheroid_surface_area(radius, aspect_ratio):
# https://en.wikipedia.org/wiki/Ellipsoid#Surface_area
a = 1.0
c = aspect_ratio
if a < c:
e = np.sqrt(1.0 - (a/c)**2)
return 2.0 * np.pi * radius**2 * (1.0 + (c/a) / e * np.arcsin(e))
else:
e = np.sqrt(1.0 - (c/a)**2)
return 2.0 * np.pi * radius**2 * (1 + (c/a)**2 / e * np.arctanh(e))
@pytest.mark.parametrize("name", [
"2-1-ellipse", "spheroid", "box2d", "box3d"
])
def test_mass_surface_area(actx_factory, name):
actx = actx_factory()
if name == "2-1-ellipse":
builder = mesh_data.EllipseMeshBuilder(radius=3.1, aspect_ratio=2.0)
surface_area = _ellipse_surface_area(builder.radius, builder.aspect_ratio)
elif name == "spheroid":
surface_area = _spheroid_surface_area(builder.radius, builder.aspect_ratio)
elif name == "box2d":
surface_area = 1.0
elif name == "box3d":
surface_area = 1.0
else:
raise ValueError(f"unknown geometry name: {name}")
# }}}
# {{{ convergence
from pytools.convergence import EOCRecorder
eoc = EOCRecorder()
for resolution in builder.resolutions:
dcoll = make_discretization_collection(actx, mesh, order=order)
volume_discr = dcoll.discr_from_dd(dof_desc.DD_VOLUME_ALL)
logger.info("ndofs: %d", volume_discr.ndofs)
logger.info("nelements: %d", volume_discr.mesh.nelements)
# {{{ compute surface area
ones_volm = volume_discr.zeros(actx) + 1
approx_surface_area = actx.to_numpy(op.integral(dcoll, dd, ones_volm))
logger.info(
f"surface: got {approx_surface_area:.5e} / expected {surface_area:.5e}") # noqa: G004
area_error = abs(approx_surface_area - surface_area) / abs(surface_area)
# }}}
from grudge.dt_utils import h_max_from_volume
h_max = h_max_from_volume(dcoll)
eoc.add_data_point(actx.to_numpy(h_max), area_error)
# }}}
logger.info("surface area error\n%s", str(eoc))
assert eoc.max_error() < 3e-13 or eoc.order_estimate() > order
@pytest.mark.parametrize("name", [
"2-1-ellipse",
"spheroid",
"warped_rect2",
"warped_rect3",
])
def test_mass_operator_inverse(actx_factory, name):
if name == "2-1-ellipse":
# curve
builder = mesh_data.EllipseMeshBuilder(radius=3.1, aspect_ratio=2.0)
elif name == "spheroid":
# surface
builder = mesh_data.SpheroidMeshBuilder()
elif name.startswith("warped_rect"):
builder = mesh_data.WarpedRectMeshBuilder(dim=int(name[-1]))
elif name == "gh-339-1":
builder = mesh_data.GmshMeshBuilder3D("gh-339.msh")
order = 1
# NOTE: We're definitely not evaluating the bilinear forms accurately
# in that case, the mappings are very non-constant.
# It's kind of surprising that WADG manages to make a 15-digit inverse,
# but empirically it seems to.
elif name == "gh-339-1-overint":
builder = mesh_data.GmshMeshBuilder3D("gh-339.msh")
order = 1
overintegrate = True
elif name == "gh-339-4":
builder = mesh_data.GmshMeshBuilder3D("gh-339.msh")
raise ValueError(f"unknown geometry name: {name}")
from pytools.convergence import EOCRecorder
eoc = EOCRecorder()
for resolution in builder.resolutions:
mesh = builder.get_mesh(resolution)
dcoll = make_discretization_collection(
actx, mesh, discr_tag_to_group_factory={
dof_desc.DISCR_TAG_BASE: (
InterpolatoryEdgeClusteredGroupFactory(order)),
dof_desc.DISCR_TAG_QUAD: (
QuadratureGroupFactory(order))
})
volume_discr = dcoll.discr_from_dd(dof_desc.DD_VOLUME_ALL)
logger.info("ndofs: %d", volume_discr.ndofs)
logger.info("nelements: %d", volume_discr.mesh.nelements)
# {{{ compute inverse mass
def f(x):
return actx.np.cos(4.0 * x[0])
x_volm = actx.thaw(volume_discr.nodes())
f_volm = f(x_volm)
f_inv = op.inverse_mass(
dcoll, op.mass(dcoll, dd, f_volm)
)
else:
dd_base_vol = dof_desc.as_dofdesc(
dof_desc.DTAG_VOLUME_ALL, dof_desc.DISCR_TAG_BASE)
dd_quad_vol = dof_desc.as_dofdesc(
dof_desc.DTAG_VOLUME_ALL, dof_desc.DISCR_TAG_QUAD)
f_inv = op.inverse_mass(
dcoll, op.mass(dcoll, dd_quad_vol,
op.project(dcoll, dd_base_vol, dd_quad_vol, f_volm)))
inv_error = actx.to_numpy(
op.norm(dcoll, f_volm - f_inv, 2) / op.norm(dcoll, f_volm, 2))
from grudge.dt_utils import h_max_from_volume
h_max = h_max_from_volume(dcoll)
eoc.add_data_point(actx.to_numpy(h_max), inv_error)
logger.info("inverse mass error\n%s", str(eoc))
# NOTE: both cases give 1.0e-16-ish at the moment, but just to be on the
# safe side, choose a slightly larger tolerance
assert eoc.max_error() < 1.0e-14
# }}}
# {{{ surface face normal orthogonality
@pytest.mark.parametrize("mesh_name", ["2-1-ellipse", "spheroid"])
def test_face_normal_surface(actx_factory, mesh_name):
"""Check that face normals are orthogonal to the surface normal"""
# {{{ geometry
if mesh_name == "2-1-ellipse":
builder = mesh_data.EllipseMeshBuilder(radius=3.1, aspect_ratio=2.0)
raise ValueError(f"unknown mesh name: {mesh_name}")
order = 4
mesh = builder.get_mesh(builder.resolutions[0], order)
dcoll = make_discretization_collection(actx, mesh, order=order)
volume_discr = dcoll.discr_from_dd(dof_desc.DD_VOLUME_ALL)
logger.info("ndofs: %d", volume_discr.ndofs)
logger.info("nelements: %d", volume_discr.mesh.nelements)
from meshmode.discretization.connection import FACE_RESTR_INTERIOR
df = dof_desc.as_dofdesc(FACE_RESTR_INTERIOR)
ambient_dim = mesh.ambient_dim
surf_normal = op.project(
dcoll, dv, df,
surf_normal = surf_normal / actx.np.sqrt(sum(surf_normal**2))
face_normal_i = geometry.normal(actx, dcoll, df)
face_normal_e = dcoll.opposite_face_connection(
dof_desc.BoundaryDomainTag(
dof_desc.FACE_RESTR_INTERIOR, dof_desc.VTAG_ALL)
)(face_normal_i)
if ambient_dim == 3:
# NOTE: there's only one face tangent in 3d
geometry.pseudoscalar(actx, dcoll, dd=df)
/ geometry.area_element(actx, dcoll, dd=df)
# }}}
# {{{ checks
rtol = 1.0e-14
# check interpolated surface normal is orthogonal to face normal
error = _eval_error(surf_normal.dot(face_normal_i))
logger.info("error[n_dot_i]: %.5e", error)
assert error < rtol
# check angle between two neighboring elements
error = _eval_error(face_normal_i.dot(face_normal_e) + 1.0)
logger.info("error[i_dot_e]: %.5e", error)
assert error > rtol
# check orthogonality with face tangent
if ambient_dim == 3:
error = _eval_error(face_tangent.dot(face_normal_i))
logger.info("error[t_dot_i]: %.5e", error)
assert error < 5 * rtol
# }}}
# }}}
# {{{ diff operator
@pytest.mark.parametrize("dim", [1, 2, 3])
def test_tri_diff_mat(actx_factory, dim, order=4):
"""Check differentiation matrix along the coordinate axes on a disk
Uses sines as the function to differentiate.
"""
actx = actx_factory()
from pytools.convergence import EOCRecorder
axis_eoc_recs = [EOCRecorder() for axis in range(dim)]
def f(x, axis):
return actx.np.sin(3*x[axis])
def df(x, axis):
return 3*actx.np.cos(3*x[axis])
mesh = mgen.generate_regular_rect_mesh(a=(-0.5,)*dim, b=(0.5,)*dim,
nelements_per_axis=(n,)*dim, order=4)
dcoll = make_discretization_collection(actx, mesh, order=4)
volume_discr = dcoll.discr_from_dd(dof_desc.DD_VOLUME_ALL)
x = actx.thaw(volume_discr.nodes())
for axis in range(dim):
df_num = op.local_grad(dcoll, f(x, axis))[axis]
df_volm = df(x, axis)
linf_error = flat_norm(df_num - df_volm, ord=np.inf)
axis_eoc_recs[axis].add_data_point(1/n, actx.to_numpy(linf_error))
for axis, eoc_rec in enumerate(axis_eoc_recs):
logger.info("axis %d\n%s", axis, eoc_rec)
assert eoc_rec.order_estimate() > order - 0.25
# }}}
# {{{ divergence theorem
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@pytest.mark.parametrize(
"case", ["circle", "tp_box2", "tp_box3", "gh-403", "gh-339"])
def test_gauss_theorem(actx_factory, case, visualize=False):
"""Verify Gauss's theorem explicitly on a mesh"""
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order = 2
use_overint = False
if case == "circle":
from meshpy.geometry import GeometryBuilder, make_circle
from meshpy.triangle import MeshInfo, build
geob = GeometryBuilder()
geob.add_geometry(*make_circle(1))
mesh_info = MeshInfo()
geob.set(mesh_info)
mesh_info = build(mesh_info)
from meshmode.mesh.io import from_meshpy
mesh = from_meshpy(mesh_info, order=1)
elif case == "gh-403":
# https://github.com/inducer/meshmode/issues/403
from meshmode.mesh.io import read_gmsh
mesh = read_gmsh("gh-403.msh")
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elif case == "gh-339":
# https://github.com/inducer/grudge/issues/339
from meshmode.mesh.io import read_gmsh
mesh = read_gmsh("gh-339.msh")
order = 1
use_overint = True
elif case.startswith("tp_box"):
dim = int(case[-1])
mesh = mgen.generate_regular_rect_mesh(
a=(-0.5,)*dim,
b=(0.5,)*dim,
nelements_per_axis=(4,)*dim,
group_cls=TensorProductElementGroup)
else:
raise ValueError(f"unknown case: {case}")
from meshmode.mesh import BTAG_ALL
actx = actx_factory()
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dcoll = make_discretization_collection(
actx, mesh, discr_tag_to_group_factory={
dof_desc.DISCR_TAG_BASE: (
InterpolatoryEdgeClusteredGroupFactory(order)),
dof_desc.DISCR_TAG_QUAD: (
QuadratureGroupFactory(order))
})
volm_disc = dcoll.discr_from_dd(dof_desc.DD_VOLUME_ALL)
x_volm = actx.thaw(volm_disc.nodes())
if len(x) == 3:
x0, x1, x2 = x
elif len(x) == 2:
x0, x1 = x
x2 = 0
else:
raise ValueError("unsupported dimensionality")
return flat_obj_array(
actx.np.sin(3*x0) + actx.np.cos(3*x1) + 2*actx.np.cos(2*x2),
actx.np.sin(2*x0) + actx.np.cos(x1) + 4*actx.np.cos(0.5*x2),
actx.np.sin(1*x0) + actx.np.cos(2*x1) + 3*actx.np.cos(0.8*x2),
)[:dcoll.ambient_dim]
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if not use_overint:
div_f = op.local_div(dcoll, f_volm)
int_1 = op.integral(dcoll, "vol", div_f)
prj_f = op.project(dcoll, "vol", BTAG_ALL, f_volm)
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f_dot_n = prj_f.dot(normal)
int_2 = op.integral(dcoll, BTAG_ALL, f_dot_n)
else:
dd_base_vol = dof_desc.as_dofdesc(
dof_desc.DTAG_VOLUME_ALL, dof_desc.DISCR_TAG_BASE)
dd_quad_vol = dof_desc.as_dofdesc(
dof_desc.DTAG_VOLUME_ALL, dof_desc.DISCR_TAG_QUAD)
dd_quad_bd = dof_desc.as_dofdesc(BTAG_ALL, dof_desc.DISCR_TAG_QUAD)
div_f = op.local_div(
dcoll, dd_quad_vol,
op.project(dcoll, dd_base_vol, dd_quad_vol, f_volm))
int_1 = op.integral(dcoll, dd_quad_vol, div_f)
prj_f = op.project(dcoll, "vol", dd_quad_bd, f_volm)
normal = geometry.normal(actx, dcoll, dd_quad_bd)
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f_dot_n = prj_f.dot(normal)
int_2 = op.integral(dcoll, dd_quad_bd, f_dot_n)
if visualize:
from grudge.shortcuts import make_boundary_visualizer, make_visualizer
vis = make_visualizer(dcoll)
bvis = make_boundary_visualizer(dcoll)
vis.write_vtk_file(
f"gauss-thm-{case}-vol.vtu", [("div_f", div_f),])
bvis.write_vtk_file(
f"gauss-thm-{case}-bdry.vtu", [
("f_dot_n", f_dot_n),
("normal", normal),
])
assert abs(int_1 - int_2) < 1e-13
@pytest.mark.parametrize("mesh_name", ["2-1-ellipse", "2-1-spheroid"])
def test_surface_divergence_theorem(actx_factory, mesh_name, visualize=False):
r"""Check the surface divergence theorem.
.. math::
\int_Sigma \phi \nabla_i f_i =
\int_\Sigma \nabla_i \phi f_i +
\int_\Sigma \kappa \phi f_i n_i +
\int_{\partial \Sigma} \phi f_i m_i
where :math:`n_i` is the surface normal and :class:`m_i` is the
face normal (which should be orthogonal to both the surface normal
and the face tangent).
"""
# {{{ cases
if mesh_name == "2-1-ellipse":
builder = mesh_data.EllipseMeshBuilder(radius=3.1, aspect_ratio=2.0)
elif mesh_name == "2-1-spheroid":
builder = mesh_data.SpheroidMeshBuilder(radius=3.1, aspect_ratio=2.0)
elif mesh_name == "circle":
builder = mesh_data.EllipseMeshBuilder(radius=1.0, aspect_ratio=1.0)
elif mesh_name == "starfish":
elif mesh_name == "sphere":
builder = mesh_data.SphereMeshBuilder(radius=1.0)
raise ValueError(f"unknown mesh name: {mesh_name}")
return flat_obj_array(
actx.np.sin(3*x[1]) + actx.np.cos(3*x[0]) + 1.0,
actx.np.sin(2*x[0]) + actx.np.cos(x[1]),
3.0 * actx.np.cos(x[0] / 2) + actx.np.cos(x[1]),
)[:ambient_dim]
from pytools.convergence import EOCRecorder
eoc_global = EOCRecorder()
eoc_local = EOCRecorder()
theta = np.pi / 3.33
ambient_dim = builder.ambient_dim
if ambient_dim == 2:
mesh_rotation = np.array([
[np.cos(theta), -np.sin(theta)],
[np.sin(theta), np.cos(theta)],
])
else:
mesh_rotation = np.array([
[1.0, 0.0, 0.0],
[0.0, np.cos(theta), -np.sin(theta)],
[0.0, np.sin(theta), np.cos(theta)],
])
mesh_offset = np.array([0.33, -0.21, 0.0])[:ambient_dim]
for i, resolution in enumerate(builder.resolutions):
from meshmode.discretization.connection import FACE_RESTR_ALL
from meshmode.mesh.processing import affine_map
from meshmode.discretization.poly_element import QuadratureSimplexGroupFactory
qtag = dof_desc.DISCR_TAG_QUAD
dcoll = make_discretization_collection(
discr_tag_to_group_factory={
qtag: QuadratureSimplexGroupFactory(2 * order)
volume = dcoll.discr_from_dd(dof_desc.DD_VOLUME_ALL)
logger.info("ndofs: %d", volume.ndofs)
logger.info("nelements: %d", volume.mesh.nelements)
dq = dd.with_discr_tag(qtag)
df = dof_desc.as_dofdesc(FACE_RESTR_ALL)
ambient_dim = dcoll.ambient_dim
f_num = f(actx.thaw(dcoll.nodes(dd=dd)))
f_quad_num = f(actx.thaw(dcoll.nodes(dd=dq)))
kappa = geometry.summed_curvature(actx, dcoll, dd=dq)
normal = geometry.normal(actx, dcoll, dd=dq)
face_normal = geometry.normal(actx, dcoll, df)
face_f = op.project(dcoll, dd, df, f_num)
stiff = op.mass(dcoll, sum(op.local_d_dx(dcoll, i, f_num_i)
for i, f_num_i in enumerate(f_num)))
stiff_t = sum(op.weak_local_d_dx(dcoll, i, f_num_i)
for i, f_num_i in enumerate(f_num))
kterm = op.mass(dcoll, dq, kappa * f_quad_num.dot(normal))
flux = op.face_mass(dcoll, face_f.dot(face_normal))
op_global = op.nodal_sum(dcoll, dd, stiff - (stiff_t + kterm))
op_local = op.elementwise_sum(dcoll, dd, stiff - (stiff_t + kterm + flux))
# compute max element size
from grudge.dt_utils import h_max_from_volume
h_max = actx.to_numpy(h_max_from_volume(dcoll))
err_global = actx.to_numpy(abs(op_global))
err_local = actx.to_numpy(op.norm(dcoll, op_local, np.inf))
logger.info("errors: h_max %.5e global %.5e local %.5e",
h_max, err_global, err_local)
eoc_global.add_data_point(h_max, err_global)
eoc_local.add_data_point(h_max, err_local)
filename = f"surface_divergence_theorem_{mesh_name}_{i:04d}.vtu"
vis.write_vtk_file(filename, [
("r", actx.np.log10(op_local))
], overwrite=True)
logger.info("eoc_global:\n%s", str(eoc_global))
logger.info("eoc_local:\n%s", str(eoc_local))
assert eoc_global.max_error() < 1.0e-12 \
or eoc_global.order_estimate() > exp_order - 0.5
assert eoc_local.max_error() < 1.0e-12 \
or eoc_local.order_estimate() > exp_order - 0.5
# }}}
# {{{ models: advection
@pytest.mark.parametrize(("mesh_name", "mesh_pars"), [
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("disk", [0.07, 0.02, 0.01]),
("rect2", [4, 8]),
("rect3", [4, 6]),
@pytest.mark.parametrize("op_type", ["strong", "weak"])
@pytest.mark.parametrize("flux_type", ["central"])
@pytest.mark.parametrize("order", [3, 4, 5])
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# test: 'test_convergence_advec(cl._csc, "disk", [0.1, 0.05], "strong", "upwind", 3)'
def test_convergence_advec(actx_factory, mesh_name, mesh_pars, op_type, flux_type,
"""Test whether 2D advection actually converges"""
actx = actx_factory()
from pytools.convergence import EOCRecorder
eoc_rec = EOCRecorder()
for mesh_par in mesh_pars:
mesh = mgen.generate_box_mesh(
[np.linspace(-1.0, 1.0, mesh_par)],
order=order)
dim = 1
dt_factor = 1.0
elif mesh_name == "disk":
from meshpy.geometry import GeometryBuilder, make_circle
from meshpy.triangle import MeshInfo, build
geob = GeometryBuilder()
geob.add_geometry(*make_circle(1))
mesh_info = MeshInfo()
geob.set(mesh_info)
mesh_info = build(mesh_info, max_volume=mesh_par)
from meshmode.mesh.io import from_meshpy
mesh = from_meshpy(mesh_info, order=1)
dim = 2
dt_factor = 4
elif mesh_name.startswith("rect"):
mesh = mgen.generate_regular_rect_mesh(a=(-0.5,)*dim, b=(0.5,)*dim,
nelements_per_axis=(mesh_par,)*dim, order=4)
if dim == 2:
dt_factor = 4
elif dim == 3:
dt_factor = 2
else:
raise ValueError(f"dt_factor not known for {dim}d")
elif mesh_name.startswith("warped"):
dim = int(mesh_name[-1:])
mesh = mgen.generate_warped_rect_mesh(dim, order=order,
nelements_side=mesh_par)
if dim == 2:
dt_factor = 4
elif dim == 3:
dt_factor = 2
else:
raise ValueError(f"dt_factor not known for {dim}d")
else:
raise ValueError("invalid mesh name: " + mesh_name)
v = np.array([0.27, 0.31, 0.1])[:dim]
norm_v = la.norm(v)
def f(x):
def u_analytic(x, t=0, v=v, norm_v=norm_v):
return f(-v.dot(x)/norm_v + t*norm_v)
StrongAdvectionOperator,
WeakAdvectionOperator,
dcoll = make_discretization_collection(actx, mesh, order=order)
op_class = {"strong": StrongAdvectionOperator,
"weak": WeakAdvectionOperator}[op_type]
adv_operator = op_class(dcoll, v,
inflow_u=lambda t, dcoll=dcoll: u_analytic(
actx.thaw(dcoll.nodes(dd=BTAG_ALL)),
nodes = actx.thaw(dcoll.nodes())
def rhs(t, u, adv_operator=adv_operator):
compiled_rhs = actx.compile(rhs)
if dim == 3:
final_time = 0.1
else:
final_time = 0.2
from grudge.dt_utils import h_max_from_volume
h_max = h_max_from_volume(dcoll, dim=dcoll.ambient_dim)
dt = actx.to_numpy(dt_factor * h_max/order**2)
tol = 1e-14
dt = final_time/nsteps + tol
from grudge.shortcuts import compiled_lsrk45_step, make_visualizer
t = 0
while t < final_time - tol:
step += 1
logger.debug("[%04d] t = %.5f", step, t)
u = compiled_lsrk45_step(actx, u, t, dt, compiled_rhs)
if visualize:
vis.write_vtk_file(
f"fld-{mesh_par}-{step:04d}vtu" % (mesh_par, step),
if t + dt >= final_time - tol:
dt = final_time-t
u - u_analytic(nodes, t=t),
logger.info("h_max %.5e error %.5e", actx.to_numpy(h_max), error_l2)
eoc_rec.add_data_point(actx.to_numpy(h_max), actx.to_numpy(error_l2))
logger.info("\n%s", eoc_rec.pretty_print(
abscissa_label="h",
error_label="L2 Error"))
if mesh_name.startswith("warped"):
# NOTE: curvilinear meshes are hard
assert eoc_rec.order_estimate() > order - 0.5
else:
assert eoc_rec.order_estimate() > order
# }}}
# {{{ models: maxwell
@pytest.mark.parametrize("order", [3, 4, 5])
def test_convergence_maxwell(actx_factory, order):
"""Test whether 3D Maxwell's actually converges"""
actx = actx_factory()
from pytools.convergence import EOCRecorder
eoc_rec = EOCRecorder()
dims = 3
ns = [4, 6, 8]
for n in ns:
mesh = mgen.generate_regular_rect_mesh(
a=(0.0,)*dims,
b=(1.0,)*dims,
nelements_per_axis=(n,)*dims)
dcoll = make_discretization_collection(actx, mesh, order=order)
epsilon = 1
mu = 1
from grudge.models.em import get_rectangular_cavity_mode
def analytic_sol(x, t=0):
return get_rectangular_cavity_mode(actx, x, t, 1, (1, 2, 2))
nodes = actx.thaw(dcoll.nodes())
fields = analytic_sol(nodes, t=0)
from grudge.models.em import MaxwellOperator
maxwell_operator = MaxwellOperator(
dcoll,
epsilon,
mu,
flux_type=0.5,
dimensions=dims
)
maxwell_operator.check_bc_coverage(mesh)
def rhs(t, w, maxwell_operator=maxwell_operator):
return maxwell_operator.operator(t, w)
dt = actx.to_numpy(maxwell_operator.estimate_rk4_timestep(actx, dcoll))
final_t = dt * 5
nsteps = int(final_t/dt)
from grudge.shortcuts import set_up_rk4
dt_stepper = set_up_rk4("w", dt, fields, rhs)
logger.info("dt %.5e nsteps %5d", dt, nsteps)
step = 0
for event in dt_stepper.run(t_end=final_t):
if isinstance(event, dt_stepper.StateComputed):
assert event.component_id == "w"
esc = event.state_component
step += 1
logger.debug("[%04d] t = %.5e", step, event.t)
sol = analytic_sol(nodes, t=step * dt)
total_error = op.norm(dcoll, esc - sol, 2)
eoc_rec.add_data_point(1.0/n, actx.to_numpy(total_error))
logger.info("\n%s", eoc_rec.pretty_print(
abscissa_label="h",
error_label="L2 Error"))
assert eoc_rec.order_estimate() > order
# }}}
# {{{ models: variable coefficient advection oversampling
@pytest.mark.parametrize("order", [2, 3, 4])
def test_improvement_quadrature(actx_factory, order):
"""Test whether quadrature improves things and converges"""
from meshmode.discretization.poly_element import QuadratureSimplexGroupFactory
from pytools.convergence import EOCRecorder
from grudge.models.advection import VariableCoefficientAdvectionOperator
actx = actx_factory()
return actx.np.exp(-np.dot(x, x) / source_width**2)
logger.info("-" * 75)
logger.info(descr)
logger.info("-" * 75)
if use_quad:
qtag = dof_desc.DISCR_TAG_QUAD