From 5c4129ba8ec9b830215ed607ef9e3df610eca2b7 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Wed, 26 Aug 2020 18:50:45 -0500 Subject: [PATCH 01/39] Run Gitlab CI doc job on all branches, not just master --- .gitlab-ci.yml | 2 -- 1 file changed, 2 deletions(-) diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index a77d7210..3272fecb 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -89,5 +89,3 @@ Documentation: - poetry run bash ./doc/build-docs.sh tags: - python3 - only: - - master -- GitLab From daa5253fa92ae2fa8bfe00eb296445679127419a Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Wed, 26 Aug 2020 23:32:42 -0500 Subject: [PATCH 02/39] Add Github CI doc job --- .github/workflows/ci.yml | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index d669091f..5e9ac937 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -42,6 +42,8 @@ jobs: run: poetry run mypy relate course - name: "Safety" run: poetry run safety check ${safety_ignores} --full-report + - name: "Sphinx" + run: poetry run make html SPHINXOPTS="-W --keep-going -n" pytest: @@ -107,7 +109,7 @@ jobs: poetry run relate validate . poetry run relate test-code questions/autograded-python-example.yml poetry run relate expand-yaml flows/quiz-test.yml > /dev/null - + # pytest-windows: # name: Python - Windows # runs-on: windows-latest @@ -141,6 +143,6 @@ jobs: # uses: codecov/codecov-action@v1 # with: # fail_ci_if_error: true - + # vim: sw=2 -- GitLab From 5d5eb2c6b43635d767301bc41b3fb3c9670a8d92 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Wed, 26 Aug 2020 23:32:57 -0500 Subject: [PATCH 03/39] Run Github CI linters only with one Python version --- .github/workflows/ci.yml | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 5e9ac937..2f271592 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -13,14 +13,11 @@ jobs: lint: name: Lint and typecheck runs-on: ubuntu-latest - strategy: - matrix: - python-version: [3.6, 3.7, 3.8] steps: - uses: actions/checkout@v2 - uses: actions/setup-python@v1 with: - python-version: ${{ matrix.python-version }} + python-version: '3.x' - name: Install Poetry uses: dschep/install-poetry-action@v1.3 with: -- GitLab From 5626d4c4b954510065cc11a1d4427fac16e7e629 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Wed, 26 Aug 2020 23:34:09 -0500 Subject: [PATCH 04/39] Doc fixes --- course/page/base.py | 91 ++++++++++++++++++++++++------------------- course/page/upload.py | 6 --- course/validation.py | 13 +++++++ doc/conf.py | 12 +++++- doc/content.rst | 6 +-- doc/flow.rst | 17 ++++---- doc/grading.rst | 3 -- doc/index.rst | 11 +++--- 8 files changed, 93 insertions(+), 66 deletions(-) delete mode 100644 doc/grading.rst diff --git a/course/page/base.py b/course/page/base.py index 2e3edc9a..7fb543b8 100644 --- a/course/page/base.py +++ b/course/page/base.py @@ -25,6 +25,7 @@ THE SOFTWARE. """ import django.forms as forms +from django import http from course.validation import validate_struct, ValidationError from course.constants import MAX_EXTRA_CREDIT_FACTOR @@ -38,20 +39,35 @@ from django.utils.translation import ( ) from django.conf import settings +from course.models import ( # noqa + Course, + FlowSession + ) +from relate.utils import Repo_ish + # {{{ mypy -from typing import Text, Optional, Any, Tuple, Dict, Callable, FrozenSet, Union, TYPE_CHECKING # noqa -if TYPE_CHECKING: - from django import http # noqa - from course.models import ( # noqa - Course, - FlowSession - ) - from course.content import Repo_ish # noqa +from typing import Text, Optional, Any, Tuple, Dict, Callable, FrozenSet, Union # }}} +__doc__ = """ +.. autoclass:: PageContext +.. autoclass:: PageBehavior + +.. autoclass:: AnswerFeedback + +.. exception:: InvalidPageData + +.. autoclass:: PageBase + +Stub Docs of Internals +====================== + +.. class:: Repo_ish +""" + mark_safe_lazy = lazy(mark_safe, str) @@ -72,12 +88,12 @@ class PageContext(object): def __init__( self, - course, # type: Course - repo, # type: Repo_ish - commit_sha, # type: bytes - flow_session, # type: FlowSession - in_sandbox=False, # type: bool - page_uri=None, # type: Optional[str] + course: Course, + repo: Repo_ish, + commit_sha: bytes, + flow_session: FlowSession, + in_sandbox: bool = False, + page_uri: Optional[str] = None, ): # type: (...) -> None @@ -508,12 +524,11 @@ class PageBase(object): def answer_data( self, - page_context, # type: PageContext - page_data, # type: Any - form, # type: forms.Form - files_data, # type: Any - ): - # type: (...) -> Any + page_context: PageContext, + page_data: Any, + form: forms.Form, + files_data: Any, + ) -> Any: """Return a JSON-persistable object reflecting the user's answer on the form. This will be passed to methods below as *answer_data*. """ @@ -540,12 +555,11 @@ class PageBase(object): def post_form( self, - page_context, # type: PageContext - page_data, # type: Any - post_data, # type: Any - files_data # type: Any - ): - # type: (...) -> forms.Form + page_context: PageContext, + page_data: Any, + post_data: Any, + files_data: Any, + ) -> forms.Form: raise NotImplementedError() def process_form_post( @@ -555,8 +569,7 @@ class PageBase(object): post_data, # type: Any files_data, # type: Any page_behavior, # type: PageBehavior - ): - # type: (...) -> forms.Form + ) -> forms.Form: """Return a form with the POST response from *post_data* and *files_data* filled in. @@ -596,11 +609,10 @@ class PageBase(object): def make_grading_form( self, - page_context, # type: PageContext - page_data, # type: Any - grade_data # type: Any - ): - # type: (...) -> forms.Form + page_context: PageContext, + page_data: Any, + grade_data: Any, + ) -> forms.Form: """ :arg grade_data: value returned by :meth:`update_grade_data_from_grading_form_v2`. May be *None*. @@ -611,13 +623,12 @@ class PageBase(object): def post_grading_form( self, - page_context, # type: PageContext - page_data, # type: Any - grade_data, # type: Any - post_data, # type: Any - files_data # type: Any - ): - # type: (...) -> forms.Form + page_context: PageContext, + page_data: Any, + grade_data: Any, # type: Any + post_data: Any, # type: Any + files_data: Any, + ) -> forms.Form: """Return a form with the POST response from *post_data* and *files_data* filled in. diff --git a/course/page/upload.py b/course/page/upload.py index 2c5024fa..a3347275 100644 --- a/course/page/upload.py +++ b/course/page/upload.py @@ -143,12 +143,6 @@ class FileUploadQuestion(PageBaseWithTitle, PageBaseWithValue, Content that is revealed when answers are visible (see :ref:`flow-permissions`). Written in :ref:`markup`. - .. attribute:: correct_answer - - Optional. - Content that is revealed when answers are visible - (see :ref:`flow-permissions`). Written in :ref:`markup`. - .. attribute:: rubric Required. diff --git a/course/validation.py b/course/validation.py index f00ddd23..39d135c2 100644 --- a/course/validation.py +++ b/course/validation.py @@ -50,6 +50,19 @@ if TYPE_CHECKING: # }}} +__doc__ = """ +.. autoclass:: ValidationContext + +.. autofunction:: validate_struct + +Stub Docs +========= + +.. class:: Course +.. class:: Repo_ish +""" + + # {{{ validation tools class ValidationError(RuntimeError): diff --git a/doc/conf.py b/doc/conf.py index e1be25a3..bb3f34ae 100644 --- a/doc/conf.py +++ b/doc/conf.py @@ -35,9 +35,19 @@ django.setup() # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ - 'sphinx.ext.autodoc', + "sphinx.ext.autodoc", + "sphinx.ext.intersphinx", ] +intersphinx_mapping = { + "http://docs.python.org/dev": None, + "http://docs.scipy.org/doc/numpy/": None, + "django": ("http://docs.djangoproject.com/en/dev/", + "http://docs.djangoproject.com/en/dev/_objects/"), + "https://docs.sympy.org/latest": None, + "https://www.dulwich.io/docs/": None, + } + # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] diff --git a/doc/content.rst b/doc/content.rst index da0f303c..d6998062 100644 --- a/doc/content.rst +++ b/doc/content.rst @@ -113,7 +113,7 @@ literals:: :ref:`markup` does its own Jinja expansion though, so such block literals *can* use Jinja. -.. comment:: +.. :: (Let's keep this undocumented for now.) @@ -338,7 +338,7 @@ RELATE provides the functionality of rendering `Ipython Notebooks .. function:: render_notebook_cells(ipynb_path, indices=None, clear_output=False, clear_markdown=False) - :param ipynb_path: :class:`string`, the path of the ipython notebook in + :param ipynb_path: :class:`str`, the path of the ipython notebook in the repo. :param indices: :class:`list`, the indices of cells which are expected to be rendered. For example, ``[1, 2, 3, 6]`` or ``range(3, -1)``. If not @@ -347,7 +347,7 @@ RELATE provides the functionality of rendering `Ipython Notebooks output of code cells should be removed. Default: `False`. :param clear_markdown: :class:`bool`, indicating whether all text cells will be removed. Default: `False`. - :rtype: :class:`string`, rendered markdown which will be consequently + :rtype: :class:`str`, rendered markdown which will be consequently converted to HTML. For example, the following snippet shows the HTML version of ``test.ipynb`` in repo diff --git a/doc/flow.rst b/doc/flow.rst index dd31cf0c..bfad1a15 100644 --- a/doc/flow.rst +++ b/doc/flow.rst @@ -615,14 +615,14 @@ Each group allows the following attributes: .. attribute:: shuffle (Optional) A boolean (True/False) indicating whether the order - of pages should be as in the list :attr:`FlowGroup.pages` or + of pages should be as in the list :attr:`pages` or determined by random shuffling .. attribute:: max_page_count (Optional) An integer limiting the page count of this group to a certain value. Allows selection of a random subset by combining - with :attr:`FlowGroup.shuffle`. + with :attr:`shuffle`. .. _page-permissions: @@ -708,12 +708,13 @@ The following page types are predefined: .. |is-optional-page-attr| replace:: Optional. A Boolean value indicating whether the page is an optional page - which does not require answer for full completion of the flow. - If ``true``, :attr:`value` should not present. Defaults to ``false`` if not present. - Note that ``is_optional_page: true`` differs from ``value: 0`` in that finishing flows - with unanswered page(s) with the latter will be warned of "unanswered question(s)", - while with the former won't. When using not-for-grading page(s) to collect - answers from students, it's to better use ``value: 0``. + which does not require answer for full completion of the flow. If + ``true``, the attribute *value* should not present. Defaults to ``false`` + if not present. Note that ``is_optional_page: true`` differs from ``value: + 0`` in that finishing flows with unanswered page(s) with the latter will be + warned of "unanswered question(s)", while with the former won't. When using + not-for-grading page(s) to collect answers from students, it's to better + use ``value: 0``. .. |text-widget-page-attr| replace:: diff --git a/doc/grading.rst b/doc/grading.rst deleted file mode 100644 index 35a34e7e..00000000 --- a/doc/grading.rst +++ /dev/null @@ -1,3 +0,0 @@ -Grading -======= - diff --git a/doc/index.rst b/doc/index.rst index e8fd262c..fdac0e6c 100644 --- a/doc/index.rst +++ b/doc/index.rst @@ -62,11 +62,12 @@ Table of Contents .. toctree:: :maxdepth: 3 - content.rst - flow.rst - api.rst - faq.rst - misc.rst + content + flow + page + api + faq + misc * :ref:`genindex` -- GitLab From 21085ba2a96915f5e310b49b50ba277391ce7059 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Wed, 26 Aug 2020 23:34:20 -0500 Subject: [PATCH 05/39] Doc upload script: Run sphinx in strict mode --- doc/build-docs.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/doc/build-docs.sh b/doc/build-docs.sh index af825a06..487058cb 100644 --- a/doc/build-docs.sh +++ b/doc/build-docs.sh @@ -20,7 +20,7 @@ Host doc-upload StrictHostKeyChecking false END -make html +make html SPHINXOPTS="-W --keep-going -n" if test -n "${DOC_UPLOAD_KEY}"; then echo "${DOC_UPLOAD_KEY}" > doc_upload_key -- GitLab From 8a78a7ec75133b9f40ad9eb21def7b3ccc9e83f3 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Wed, 26 Aug 2020 23:34:35 -0500 Subject: [PATCH 06/39] Add sphinx to dev dependencies --- poetry.lock | 351 +++++++++++++++++++++++++++++++++++++------------ pyproject.toml | 1 + 2 files changed, 268 insertions(+), 84 deletions(-) diff --git a/poetry.lock b/poetry.lock index 79c3de30..d9d59606 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,3 +1,11 @@ +[[package]] +category = "dev" +description = "A configurable sidebar-enabled Sphinx theme" +name = "alabaster" +optional = false +python-versions = "*" +version = "0.7.12" + [[package]] category = "main" description = "Low-level AMQP client for Python (fork of amqplib)." @@ -52,13 +60,23 @@ description = "Classes Without Boilerplate" name = "attrs" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "19.3.0" +version = "20.1.0" [package.extras] -azure-pipelines = ["coverage", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface", "pytest-azurepipelines"] -dev = ["coverage", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface", "sphinx", "pre-commit"] -docs = ["sphinx", "zope.interface"] -tests = ["coverage", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface"] +dev = ["coverage (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface", "sphinx", "sphinx-rtd-theme", "pre-commit"] +docs = ["sphinx", "sphinx-rtd-theme", "zope.interface"] +tests = ["coverage (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface"] + +[[package]] +category = "dev" +description = "Internationalization utilities" +name = "babel" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +version = "2.8.0" + +[package.dependencies] +pytz = ">=2015.7" [[package]] category = "main" @@ -73,8 +91,8 @@ category = "main" description = "Modern password hashing for your software and your servers" name = "bcrypt" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "3.1.7" +python-versions = ">=3.6" +version = "3.2.0" [package.dependencies] cffi = ">=1.1" @@ -82,6 +100,7 @@ six = ">=1.4.1" [package.extras] tests = ["pytest (>=3.2.1,<3.3.0 || >3.3.0)"] +typecheck = ["mypy"] [[package]] category = "main" @@ -166,7 +185,7 @@ description = "Foreign Function Interface for Python calling C code." name = "cffi" optional = false python-versions = "*" -version = "1.14.1" +version = "1.14.2" [package.dependencies] pycparser = "*" @@ -193,7 +212,7 @@ description = "Hosted coverage reports for GitHub, Bitbucket and Gitlab" name = "codecov" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "2.1.8" +version = "2.1.9" [package.dependencies] coverage = "*" @@ -260,10 +279,10 @@ description = "A high-level Python Web framework that encourages rapid developme name = "django" optional = false python-versions = ">=3.6" -version = "3.0.8" +version = "3.1" [package.dependencies] -asgiref = ">=3.2,<4.0" +asgiref = ">=3.2.10,<3.3.0" pytz = "*" sqlparse = ">=0.2.2" @@ -409,6 +428,14 @@ version = "0.4.0" [package.dependencies] six = ">=1.4.0" +[[package]] +category = "dev" +description = "Docutils -- Python Documentation Utilities" +name = "docutils" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +version = "0.16" + [[package]] category = "dev" description = "A parser for Python dependency files" @@ -481,8 +508,8 @@ category = "dev" description = "Faker is a Python package that generates fake data for you." name = "faker" optional = false -python-versions = ">=3.4" -version = "4.1.1" +python-versions = ">=3.5" +version = "4.1.2" [package.dependencies] python-dateutil = ">=2.4" @@ -550,6 +577,14 @@ optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" version = "2.10" +[[package]] +category = "dev" +description = "Getting image size from png/jpeg/jpeg2000/gif file" +name = "imagesize" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +version = "1.2.0" + [[package]] category = "main" description = "Read metadata from Python packages" @@ -572,7 +607,7 @@ description = "A port of Ruby on Rails inflector to Python" name = "inflection" optional = false python-versions = ">=3.5" -version = "0.5.0" +version = "0.5.1" [[package]] category = "main" @@ -1122,7 +1157,7 @@ description = "Pytest plugin for measuring coverage." name = "pytest-cov" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "2.10.0" +version = "2.10.1" [package.dependencies] coverage = ">=4.4" @@ -1187,7 +1222,7 @@ description = "A collection of tools for Python" name = "pytools" optional = false python-versions = "~=3.6" -version = "2020.3.1" +version = "2020.4" [package.dependencies] appdirs = ">=1.4.0" @@ -1269,6 +1304,117 @@ optional = false python-versions = "*" version = "1.3.3" +[[package]] +category = "dev" +description = "This package provides 26 stemmers for 25 languages generated from Snowball algorithms." +name = "snowballstemmer" +optional = false +python-versions = "*" +version = "2.0.0" + +[[package]] +category = "dev" +description = "Python documentation generator" +name = "sphinx" +optional = false +python-versions = ">=3.5" +version = "3.2.1" + +[package.dependencies] +Jinja2 = ">=2.3" +Pygments = ">=2.0" +alabaster = ">=0.7,<0.8" +babel = ">=1.3" +colorama = ">=0.3.5" +docutils = ">=0.12" +imagesize = "*" +packaging = "*" +requests = ">=2.5.0" +setuptools = "*" +snowballstemmer = ">=1.1" +sphinxcontrib-applehelp = "*" +sphinxcontrib-devhelp = "*" +sphinxcontrib-htmlhelp = "*" +sphinxcontrib-jsmath = "*" +sphinxcontrib-qthelp = "*" +sphinxcontrib-serializinghtml = "*" + +[package.extras] +docs = ["sphinxcontrib-websupport"] +lint = ["flake8 (>=3.5.0)", "flake8-import-order", "mypy (>=0.780)", "docutils-stubs"] +test = ["pytest", "pytest-cov", "html5lib", "typed-ast", "cython"] + +[[package]] +category = "dev" +description = "sphinxcontrib-applehelp is a sphinx extension which outputs Apple help books" +name = "sphinxcontrib-applehelp" +optional = false +python-versions = ">=3.5" +version = "1.0.2" + +[package.extras] +lint = ["flake8", "mypy", "docutils-stubs"] +test = ["pytest"] + +[[package]] +category = "dev" +description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp document." +name = "sphinxcontrib-devhelp" +optional = false +python-versions = ">=3.5" +version = "1.0.2" + +[package.extras] +lint = ["flake8", "mypy", "docutils-stubs"] +test = ["pytest"] + +[[package]] +category = "dev" +description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files" +name = "sphinxcontrib-htmlhelp" +optional = false +python-versions = ">=3.5" +version = "1.0.3" + +[package.extras] +lint = ["flake8", "mypy", "docutils-stubs"] +test = ["pytest", "html5lib"] + +[[package]] +category = "dev" +description = "A sphinx extension which renders display math in HTML via JavaScript" +name = "sphinxcontrib-jsmath" +optional = false +python-versions = ">=3.5" +version = "1.0.1" + +[package.extras] +test = ["pytest", "flake8", "mypy"] + +[[package]] +category = "dev" +description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp document." +name = "sphinxcontrib-qthelp" +optional = false +python-versions = ">=3.5" +version = "1.0.3" + +[package.extras] +lint = ["flake8", "mypy", "docutils-stubs"] +test = ["pytest"] + +[[package]] +category = "dev" +description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)." +name = "sphinxcontrib-serializinghtml" +optional = false +python-versions = ">=3.5" +version = "1.1.4" + +[package.extras] +lint = ["flake8", "mypy", "docutils-stubs"] +test = ["pytest"] + [[package]] category = "main" description = "Non-validating SQL parser" @@ -1283,7 +1429,7 @@ description = "Computer algebra system (CAS) in Python" name = "sympy" optional = false python-versions = ">=3.5" -version = "1.6.1" +version = "1.6.2" [package.dependencies] mpmath = ">=0.19" @@ -1345,7 +1491,7 @@ description = "Backported and Experimental Type Hints for Python 3.5+" name = "typing-extensions" optional = false python-versions = "*" -version = "3.7.4.2" +version = "3.7.4.3" [[package]] category = "main" @@ -1417,10 +1563,14 @@ docs = ["sphinx", "jaraco.packaging (>=3.2)", "rst.linker (>=1.9)"] testing = ["jaraco.itertools", "func-timeout"] [metadata] -content-hash = "01dd73eef8ab6b2288514fb1c4a960b92ac62664323f4ef61076cefeee710f64" +content-hash = "28d48c04ebc39fb7cec74e84defebe24b46aed2695fe64c582f0f1f69daa1c1b" python-versions = "^3.6" [metadata.files] +alabaster = [ + {file = "alabaster-0.7.12-py2.py3-none-any.whl", hash = "sha256:446438bdcca0e05bd45ea2de1668c1d9b032e1a9154c2c259092d77031ddd359"}, + {file = "alabaster-0.7.12.tar.gz", hash = "sha256:a661d72d58e6ea8a57f7a86e37d86716863ee5e92788398526d58b26a4e4dc02"}, +] amqp = [ {file = "amqp-2.6.1-py2.py3-none-any.whl", hash = "sha256:aa7f313fb887c91f15474c1229907a04dac0b8135822d6603437803424c0aa59"}, {file = "amqp-2.6.1.tar.gz", hash = "sha256:70cdb10628468ff14e57ec2f751c7aa9e48e7e3651cfd62d431213c0c4e58f21"}, @@ -1442,32 +1592,25 @@ atomicwrites = [ {file = "atomicwrites-1.4.0.tar.gz", hash = "sha256:ae70396ad1a434f9c7046fd2dd196fc04b12f9e91ffb859164193be8b6168a7a"}, ] attrs = [ - {file = "attrs-19.3.0-py2.py3-none-any.whl", hash = "sha256:08a96c641c3a74e44eb59afb61a24f2cb9f4d7188748e76ba4bb5edfa3cb7d1c"}, - {file = "attrs-19.3.0.tar.gz", hash = "sha256:f7b7ce16570fe9965acd6d30101a28f62fb4a7f9e926b3bbc9b61f8b04247e72"}, + {file = 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# vim: foldmethod=marker -- GitLab From b6949c038b48e0342075a3ee24f0fbaafdcd55e3 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Wed, 26 Aug 2020 23:42:36 -0500 Subject: [PATCH 07/39] Fix some duplicate type signatures --- course/page/base.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/course/page/base.py b/course/page/base.py index 7fb543b8..7f66d7ef 100644 --- a/course/page/base.py +++ b/course/page/base.py @@ -625,8 +625,8 @@ class PageBase(object): self, page_context: PageContext, page_data: Any, - grade_data: Any, # type: Any - post_data: Any, # type: Any + grade_data: Any, + post_data: Any, files_data: Any, ) -> forms.Form: """Return a form with the POST response from *post_data* and *files_data* -- GitLab From dc89b8a7846e3fa8036d139df695b7e7e85ae236 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Thu, 27 Aug 2020 00:14:44 -0500 Subject: [PATCH 08/39] Fix sphinx invocation in Github CI --- .github/workflows/ci.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 2f271592..d483fd36 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -40,7 +40,7 @@ jobs: - name: "Safety" run: poetry run safety check ${safety_ignores} --full-report - name: "Sphinx" - run: poetry run make html SPHINXOPTS="-W --keep-going -n" + run: (cd doc; poetry run make html SPHINXOPTS="-W --keep-going -n") pytest: -- GitLab From 1b63031bd608856a920d72d0e698b80dee3b4c04 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Thu, 27 Aug 2020 08:30:01 -0500 Subject: [PATCH 09/39] Tweak sphinx invocation in Makefile --- doc/Makefile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/doc/Makefile b/doc/Makefile index 54ca9573..e463c622 100644 --- a/doc/Makefile +++ b/doc/Makefile @@ -3,7 +3,7 @@ # You can set these variables from the command line. SPHINXOPTS = -SPHINXBUILD = python `which sphinx-build` +SPHINXBUILD = python -m sphinx PAPER = BUILDDIR = _build -- GitLab From a4491a7bb37be9745a1eb92b696e98c4eaa6664c Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Thu, 27 Aug 2020 22:16:47 -0500 Subject: [PATCH 10/39] Remove sphinx makefile check --- doc/Makefile | 5 ----- 1 file changed, 5 deletions(-) diff --git a/doc/Makefile b/doc/Makefile index e463c622..eee17b1c 100644 --- a/doc/Makefile +++ b/doc/Makefile @@ -7,11 +7,6 @@ SPHINXBUILD = python -m sphinx PAPER = BUILDDIR = _build -# User-friendly check for sphinx-build -ifeq ($(shell which $(SPHINXBUILD) >/dev/null 2>&1; echo $$?), 1) -$(error The '$(SPHINXBUILD)' command was not found. Make sure you have Sphinx installed, then set the SPHINXBUILD environment variable to point to the full path of the '$(SPHINXBUILD)' executable. Alternatively you can add the directory with the executable to your PATH. If you don't have Sphinx installed, grab it from http://sphinx-doc.org/) -endif - # Internal variables. PAPEROPT_a4 = -D latex_paper_size=a4 PAPEROPT_letter = -D latex_paper_size=letter -- GitLab From 852db3a0591dede63ace812a4b3d86e00cbc3bcc Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Thu, 27 Aug 2020 22:34:48 -0500 Subject: [PATCH 11/39] Sphinx job: copy settings file so relate becomes importable --- .github/workflows/ci.yml | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index d483fd36..72bef138 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -40,7 +40,9 @@ jobs: - name: "Safety" run: poetry run safety check ${safety_ignores} --full-report - name: "Sphinx" - run: (cd doc; poetry run make html SPHINXOPTS="-W --keep-going -n") + run: | + cp local_settings_example.py local_settings.py + (cd doc; poetry run make html SPHINXOPTS="-W --keep-going -n") pytest: -- GitLab From bc603d276e23c23d683ef060bfcdf0cc13d7f616 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Thu, 27 Aug 2020 22:40:20 -0500 Subject: [PATCH 12/39] Add missing page API doc page --- doc/page.rst | 42 ++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 42 insertions(+) create mode 100644 doc/page.rst diff --git a/doc/page.rst b/doc/page.rst new file mode 100644 index 00000000..a5070d36 --- /dev/null +++ b/doc/page.rst @@ -0,0 +1,42 @@ +Flow Page Interface +=================== + +This describes the programming interface between Relate and a page in a flow. + +.. automodule:: course.page.base + +Validation +---------- + +.. automodule:: course.validation + +Canonicalization of Django Names +================================ + +.. currentmodule:: django.forms.forms + +.. class:: Form + + See :class:`django.forms.Form`. + +.. currentmodule:: django.http.request + +.. class:: HttpRequest + + See :class:`django.http.HttpRequest`. + +Stub Docs +========= + +.. currentmodule:: course.models + +.. class:: Course +.. class:: FlowSession + +.. currentmodule:: relate.utils + +.. class:: SubdirRepoWrapper + +.. currentmodule:: course.utils + +.. class:: FlowPageContext -- GitLab From e0a835ef06bef26c24f9a35b9aac8f521e4efe61 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Thu, 27 Aug 2020 22:46:22 -0500 Subject: [PATCH 13/39] Comment out sphinx html static conf path --- doc/conf.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/doc/conf.py b/doc/conf.py index bb3f34ae..e4785ea7 100644 --- a/doc/conf.py +++ b/doc/conf.py @@ -160,7 +160,7 @@ html_sidebars = { # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". -html_static_path = ['_static'] +#html_static_path = ['_static'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied -- GitLab From f9b0c011bd40c8c32cdec829a6336f51c93f27b2 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Thu, 27 Aug 2020 22:56:52 -0500 Subject: [PATCH 14/39] Fix usage of manage.py makemessages --- .ci/run-tests-for-ci.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.ci/run-tests-for-ci.sh b/.ci/run-tests-for-ci.sh index d86b7592..0e6aa008 100644 --- a/.ci/run-tests-for-ci.sh +++ b/.ci/run-tests-for-ci.sh @@ -15,7 +15,7 @@ echo "i18n" cp local_settings_example.py local_settings.py # Make sure i18n literals marked correctly -poetry run python manage.py makemessages --no-location --ignore=req.txt > output.txt +poetry run python manage.py makemessages -a --no-location --ignore=req.txt > output.txt if [[ -n $(grep "msgid" output.txt) ]]; then echo "Command 'python manage.py makemessages' failed with the following info:" -- GitLab From bcb6cb32f63289bb84e731a276cc2e7b96c1b20d Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Mon, 31 Aug 2020 15:19:10 -0500 Subject: [PATCH 15/39] Factor out common flags for pytest in CI script, use sane tracebacks --- .ci/run-tests-for-ci.sh | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/.ci/run-tests-for-ci.sh b/.ci/run-tests-for-ci.sh index 0e6aa008..1f5c76e9 100644 --- a/.ci/run-tests-for-ci.sh +++ b/.ci/run-tests-for-ci.sh @@ -29,9 +29,10 @@ poetry run python manage.py compilemessages echo "Starts testing" export RELATE_LOCAL_TEST_SETTINGS="local_settings_example.py" +PYTEST_COMMON_FLAGS="--cov-config=setup.cfg --cov-report=xml --cov=. --tb=native" if [[ "$RL_CI_TEST" = "expensive" ]]; then echo "Expensive tests" - poetry run pytest --slow --cov-config=setup.cfg --cov-report=xml --cov=. + poetry run pytest $PYTEST_COMMON_FLAGS --slow elif [[ "$RL_CI_TEST" = "postgres" ]]; then export PGPASSWORD=relatepgpass @@ -52,8 +53,8 @@ elif [[ "$RL_CI_TEST" = "postgres" ]]; then poetry run pip install psycopg2 echo "Database tests" - poetry run pytest --cov-config=setup.cfg --cov-report=xml --cov=. + poetry run pytest $PYTEST_COMMON_FLAGS else echo "Base tests" - poetry run pytest --cov-config=setup.cfg --cov-report=xml --cov=. + poetry run pytest $PYTEST_COMMON_FLAGS fi -- GitLab From 97d599cbd33a0f6249ac291fedd4acaf3f5754df Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Mon, 31 Aug 2020 15:47:46 -0500 Subject: [PATCH 16/39] CI test script: run pytest via python -m --- .ci/run-tests-for-ci.sh | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.ci/run-tests-for-ci.sh b/.ci/run-tests-for-ci.sh index 1f5c76e9..89ca02bf 100644 --- a/.ci/run-tests-for-ci.sh +++ b/.ci/run-tests-for-ci.sh @@ -32,7 +32,7 @@ export RELATE_LOCAL_TEST_SETTINGS="local_settings_example.py" PYTEST_COMMON_FLAGS="--cov-config=setup.cfg --cov-report=xml --cov=. --tb=native" if [[ "$RL_CI_TEST" = "expensive" ]]; then echo "Expensive tests" - poetry run pytest $PYTEST_COMMON_FLAGS --slow + poetry run python -m pytest $PYTEST_COMMON_FLAGS --slow elif [[ "$RL_CI_TEST" = "postgres" ]]; then export PGPASSWORD=relatepgpass @@ -53,8 +53,8 @@ elif [[ "$RL_CI_TEST" = "postgres" ]]; then poetry run pip install psycopg2 echo "Database tests" - poetry run pytest $PYTEST_COMMON_FLAGS + poetry run python -m pytest $PYTEST_COMMON_FLAGS else echo "Base tests" - poetry run pytest $PYTEST_COMMON_FLAGS + poetry run python -m pytest $PYTEST_COMMON_FLAGS fi -- GitLab From ff9d689e184545dd7ae96571b45a8fc08dd801fb Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Mon, 31 Aug 2020 15:57:06 -0500 Subject: [PATCH 17/39] Prevent upgrade to Django 3.1 --- poetry.lock | 90 ++++++++++++++++++++++++++------------------------ pyproject.toml | 2 +- 2 files changed, 47 insertions(+), 45 deletions(-) diff --git a/poetry.lock b/poetry.lock index d9d59606..e1e3b2d6 100644 --- a/poetry.lock +++ b/poetry.lock @@ -243,7 +243,7 @@ description = "cryptography is a package which provides cryptographic recipes an name = "cryptography" optional = false python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*" -version = "3.0" +version = "3.1" [package.dependencies] cffi = ">=1.8,<1.11.3 || >1.11.3" @@ -252,7 +252,6 @@ six = ">=1.4.1" [package.extras] docs = ["sphinx (>=1.6.5,<1.8.0 || >1.8.0,<3.1.0 || >3.1.0,<3.1.1 || >3.1.1)", "sphinx-rtd-theme"] docstest = ["doc8", "pyenchant (>=1.6.11)", "twine (>=1.12.0)", "sphinxcontrib-spelling (>=4.0.1)"] -idna = ["idna (>=2.1)"] pep8test = ["black", "flake8", "flake8-import-order", "pep8-naming"] ssh = ["bcrypt (>=3.1.5)"] test = ["pytest (>=3.6.0,<3.9.0 || >3.9.0,<3.9.1 || >3.9.1,<3.9.2 || >3.9.2)", "pretend", "iso8601", "pytz", "hypothesis (>=1.11.4,<3.79.2 || >3.79.2)"] @@ -279,10 +278,10 @@ description = "A high-level Python Web framework that encourages rapid developme name = "django" optional = false python-versions = ">=3.6" -version = "3.1" +version = "3.0.9" [package.dependencies] -asgiref = ">=3.2.10,<3.3.0" +asgiref = ">=3.2,<4.0" pytz = "*" sqlparse = ">=0.2.2" @@ -458,7 +457,7 @@ description = "Python Git Library" name = "dulwich" optional = false python-versions = ">=3.5" -version = "0.20.5" +version = "0.20.6" [package.dependencies] certifi = "*" @@ -468,6 +467,7 @@ urllib3 = ">=1.24.1" fastimport = ["fastimport"] https = ["urllib3 (>=1.24.1)"] pgp = ["gpg"] +watch = ["pyinotify"] [[package]] category = "main" @@ -800,7 +800,7 @@ description = "More routines for operating on iterables, beyond itertools" name = "more-itertools" optional = false python-versions = ">=3.5" -version = "8.4.0" +version = "8.5.0" [[package]] category = "main" @@ -1563,7 +1563,7 @@ docs = ["sphinx", "jaraco.packaging (>=3.2)", "rst.linker (>=1.9)"] testing = ["jaraco.itertools", "func-timeout"] [metadata] -content-hash = "28d48c04ebc39fb7cec74e84defebe24b46aed2695fe64c582f0f1f69daa1c1b" +content-hash = "f31f32ed4443504b88e2db7395935112c9a07bd144f8ab0da82cc06853e5e0bc" python-versions = "^3.6" [metadata.files] @@ -1712,25 +1712,28 @@ coverage = [ {file = "coverage-5.2.1.tar.gz", hash = "sha256:a34cb28e0747ea15e82d13e14de606747e9e484fb28d63c999483f5d5188e89b"}, ] cryptography = [ - 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This makes that editable in the Django admin. -- GitLab From b208ec505113332a6a99ef2de3ef880b897e8a45 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Mon, 31 Aug 2020 16:33:51 -0500 Subject: [PATCH 18/39] Revert imports in course.page.base to prior state --- course/page/base.py | 47 ++++++++++++++++++++++++++++++--------------- 1 file changed, 32 insertions(+), 15 deletions(-) diff --git a/course/page/base.py b/course/page/base.py index 7f66d7ef..3f320f5a 100644 --- a/course/page/base.py +++ b/course/page/base.py @@ -39,20 +39,42 @@ from django.utils.translation import ( ) from django.conf import settings -from course.models import ( # noqa - Course, - FlowSession - ) -from relate.utils import Repo_ish - # {{{ mypy -from typing import Text, Optional, Any, Tuple, Dict, Callable, FrozenSet, Union +from typing import (Text, Optional, Any, Tuple, Dict, Callable, FrozenSet, Union, + TYPE_CHECKING) + +if TYPE_CHECKING: + # FIXME There seem to be some cyclic imports that prevent importing these + # outright. + from course.models import ( # noqa + Course, + FlowSession + ) + from relate.utils import Repo_ish # }}} __doc__ = """ +Stub Docs of Internals +====================== + +.. class:: Repo_ish + + See ``relate.utils.Repo_ish``. + +.. class:: Course + + See ``course.models.Course``. + +.. class:: FlowSession + + See ``course.models.FlowSession``. + +Page Interface +============== + .. autoclass:: PageContext .. autoclass:: PageBehavior @@ -61,11 +83,6 @@ __doc__ = """ .. exception:: InvalidPageData .. autoclass:: PageBase - -Stub Docs of Internals -====================== - -.. class:: Repo_ish """ mark_safe_lazy = lazy(mark_safe, str) @@ -88,10 +105,10 @@ class PageContext(object): def __init__( self, - course: Course, - repo: Repo_ish, + course: "Course", + repo: "Repo_ish", commit_sha: bytes, - flow_session: FlowSession, + flow_session: "FlowSession", in_sandbox: bool = False, page_uri: Optional[str] = None, ): -- GitLab From a5b844bc0e5c7ea6397c6a009d01272f81f240d0 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Mon, 31 Aug 2020 16:34:10 -0500 Subject: [PATCH 19/39] Prevent autodoc from looking at type hints --- doc/conf.py | 2 ++ 1 file changed, 2 insertions(+) diff --git a/doc/conf.py b/doc/conf.py index e4785ea7..58bbc9fa 100644 --- a/doc/conf.py +++ b/doc/conf.py @@ -39,6 +39,8 @@ extensions = [ "sphinx.ext.intersphinx", ] +autodoc_typehints = "none" + intersphinx_mapping = { "http://docs.python.org/dev": None, "http://docs.scipy.org/doc/numpy/": None, -- GitLab From c38b4d51e6634825ed9e64a90e44836bc2e26e73 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Mon, 31 Aug 2020 16:44:05 -0500 Subject: [PATCH 20/39] Remove 'tags' keys from Gitlab CI config, to ensure that all jobs run on Docker --- .gitlab-ci.yml | 5 ----- 1 file changed, 5 deletions(-) diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 3272fecb..4cd3931e 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -41,9 +41,6 @@ stages: script: - "bash ./.ci/run-tests-for-ci.sh" stage: tests - tags: - - python3 - - linux except: - tags coverage: "/TOTAL.+ ([0-9]{1,3}%)/" @@ -87,5 +84,3 @@ Documentation: RELATE_LOCAL_TEST_SETTINGS: './local_settings_example.py' script: - poetry run bash ./doc/build-docs.sh - tags: - - python3 -- GitLab From e2bc0b129db4bd2a2a4bbbf1d816aef177780ec6 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Mon, 31 Aug 2020 18:37:03 -0500 Subject: [PATCH 21/39] Gitlab CI: Install docker runner --- .gitlab-ci.yml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 4cd3931e..bcc97b1c 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -25,6 +25,8 @@ stages: tags: - docker-runner before_script: + - sudo apt update + - sudo apt install gettext - export PATH="/var/lib/gitlab-runner/.local/bin:$PATH" - pip3 install --upgrade poetry - poetry install -- GitLab From 06e41cab99e11d1fd4a9832f7280261220ee82f4 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Mon, 31 Aug 2020 18:45:10 -0500 Subject: [PATCH 22/39] Use AK's ci-support image for Gitlab CI --- .gitlab-ci.yml | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index bcc97b1c..cf4a0e0c 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -21,12 +21,10 @@ stages: - docs .install-deps-template: &install-deps - image: python:3.7 + image: inducer/ci-support tags: - docker-runner before_script: - - sudo apt update - - sudo apt install gettext - export PATH="/var/lib/gitlab-runner/.local/bin:$PATH" - pip3 install --upgrade poetry - poetry install @@ -39,7 +37,6 @@ stages: .test-template: &test <<: *install-deps - image: python:3.7 script: - "bash ./.ci/run-tests-for-ci.sh" stage: tests -- GitLab From 875e3ddb87f88210110f8a3568a4998541ad063d Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Mon, 31 Aug 2020 18:48:23 -0500 Subject: [PATCH 23/39] Fix CI image name in Gitlab CI --- .gitlab-ci.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index cf4a0e0c..a1b4180a 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -21,7 +21,7 @@ stages: - docs .install-deps-template: &install-deps - image: inducer/ci-support + image: inducer/ci-base-image tags: - docker-runner before_script: -- GitLab From 6328c970e2948f6618a3c31f553fd4441f1bc778 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Mon, 31 Aug 2020 19:04:57 -0500 Subject: [PATCH 24/39] Install poetry using poetry install script in Gitlab CI --- .gitlab-ci.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index a1b4180a..7a204b3a 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -25,8 +25,8 @@ stages: tags: - docker-runner before_script: - - export PATH="/var/lib/gitlab-runner/.local/bin:$PATH" - - pip3 install --upgrade poetry + - curl -sSL https://raw.githubusercontent.com/python-poetry/poetry/master/get-poetry.py | python3 + - export PATH="$HOME/.poetry/bin:$PATH" - poetry install .quality-template: &quality -- GitLab From 5422f8462d1a66645d1d037729b0c465628c2c3d Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Mon, 31 Aug 2020 23:51:00 -0500 Subject: [PATCH 25/39] Simplify message compilation in CI test script --- .ci/run-tests-for-ci.sh | 10 +--------- 1 file changed, 1 insertion(+), 9 deletions(-) diff --git a/.ci/run-tests-for-ci.sh b/.ci/run-tests-for-ci.sh index 89ca02bf..adbc8e0a 100644 --- a/.ci/run-tests-for-ci.sh +++ b/.ci/run-tests-for-ci.sh @@ -15,15 +15,7 @@ echo "i18n" cp local_settings_example.py local_settings.py # Make sure i18n literals marked correctly -poetry run python manage.py makemessages -a --no-location --ignore=req.txt > output.txt - -if [[ -n $(grep "msgid" output.txt) ]]; then - echo "Command 'python manage.py makemessages' failed with the following info:" - echo "" - grep --color -E '^|warning: ' output.txt - exit 1; -fi - +poetry run python manage.py makemessages poetry run python manage.py compilemessages echo "Starts testing" -- GitLab From f43c431eed43c7db7e3ee37b90362b0912a448ed Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Tue, 1 Sep 2020 01:37:15 -0500 Subject: [PATCH 26/39] Code runner: label errno 99 a nuisance failure for retries --- course/page/code.py | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/course/page/code.py b/course/page/code.py index 7787640e..f48a785d 100644 --- a/course/page/code.py +++ b/course/page/code.py @@ -389,6 +389,12 @@ def is_nuisance_failure(result): if "[Errno 113] No route to host" in result["traceback"]: return True + # Prevent occasional test failures on Gitlab CI, e.g. + # https://gitlab.tiker.net/inducer/relate/-/jobs/159443 + if "[Errno 99]" in result["traceback"]: + # EADDRNOTAVAIL + return True + return False -- GitLab From ca932424e640c2cbb8075249da2710487c4f9daf Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Tue, 1 Sep 2020 01:48:40 -0500 Subject: [PATCH 27/39] Run safety from separate script, also on Github --- .ci/run-safety.sh | 3 +++ .github/workflows/ci.yml | 2 +- .gitlab-ci.yml | 4 ++++ 3 files changed, 8 insertions(+), 1 deletion(-) create mode 100644 .ci/run-safety.sh diff --git a/.ci/run-safety.sh b/.ci/run-safety.sh new file mode 100644 index 00000000..2e89edb6 --- /dev/null +++ b/.ci/run-safety.sh @@ -0,0 +1,3 @@ +#! /bin/bash +poetry run safety check \ + --full-report diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 72bef138..d5871a13 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -38,7 +38,7 @@ jobs: - name: "Mypy" run: poetry run mypy relate course - name: "Safety" - run: poetry run safety check ${safety_ignores} --full-report + run: bash ./.ci/run-safety.sh - name: "Sphinx" run: | cp local_settings_example.py local_settings.py diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 7a204b3a..d118505a 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -59,6 +59,10 @@ mypy: <<: *quality script: poetry run mypy relate course +safety: + <<: *quality + script: bash ./.ci/run-safety.sh + Python 3: <<: *test -- GitLab From da36d01a083b54bec17a530ec9b15f48e1505cb7 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Tue, 1 Sep 2020 01:50:25 -0500 Subject: [PATCH 28/39] Update django-celery-results for CVE-2020-17495 --- poetry.lock | 10 +++++----- pyproject.toml | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/poetry.lock b/poetry.lock index e1e3b2d6..da7bd3b9 100644 --- a/poetry.lock +++ b/poetry.lock @@ -314,10 +314,10 @@ description = "Celery result backends for Django." name = "django-celery-results" optional = false python-versions = "*" -version = "1.0.1" +version = "1.2.1" [package.dependencies] -celery = ">=4.0,<5.0" +celery = ">=4.4,<5.0" [[package]] category = "main" @@ -1563,7 +1563,7 @@ docs = ["sphinx", "jaraco.packaging (>=3.2)", "rst.linker (>=1.9)"] testing = ["jaraco.itertools", "func-timeout"] [metadata] -content-hash = "f31f32ed4443504b88e2db7395935112c9a07bd144f8ab0da82cc06853e5e0bc" +content-hash = "60c3f60984e1da96516b845eda808bfe105f76b8ecd8875f1b9e3538d8bfc5bf" python-versions = "^3.6" [metadata.files] @@ -1755,8 +1755,8 @@ django-bootstrap3-datetimepicker-2 = [ {file = "django-bootstrap3-datetimepicker-2-2.8.2.tar.gz", hash = "sha256:4cb4436c61d0a91a494e479ec16f53bf6655f5b9497c8765989f0210b60641db"}, ] django-celery-results = [ - {file = "django_celery_results-1.0.1-py2.py3-none-any.whl", hash = "sha256:dfa240fb535a1a2d01c9e605ad71629909318eae6b893c5009eafd7265fde10b"}, - {file = "django_celery_results-1.0.1.tar.gz", hash = "sha256:8bca2605eeff4418be7ce428a6958d64bee0f5bdf1f8e563fbc09a9e2f3d990f"}, + {file = "django_celery_results-1.2.1-py2.py3-none-any.whl", hash = "sha256:a29ab580f0e38c66c39f51cc426bbdbb2a391b8cc0867df9dea748db2c961db2"}, + {file = "django_celery_results-1.2.1.tar.gz", hash = "sha256:e390f70cc43bbc2cd7c8e4607dc29ab6211a2ab968f93677583f0160921f670c"}, ] django-codemirror-widget = [ {file = "django-codemirror-widget-0.5.0.tar.gz", hash = "sha256:a2f7facf299f3f51dff7227cc9850905b899e08485698d3f4fad110a7ad628be"}, diff --git a/pyproject.toml b/pyproject.toml index 61c5d7ab..cab1b26f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -83,7 +83,7 @@ python-memcached = "^1.59" # A task queue, used to execute long-running tasks celery = "^4.3.0" kombu = "*" -django-celery-results = "1.0.1" +django-celery-results = "^1.2.1" # For searchable select widgets django_select2 = "^7.4.2" -- GitLab From eadb496220c6b245b9203846942c2dc23cbe01cd Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Tue, 1 Sep 2020 01:54:05 -0500 Subject: [PATCH 29/39] Wait a few seconds on EADDRNOTAVAIL in code submission --- course/page/code.py | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/course/page/code.py b/course/page/code.py index f48a785d..9c45ba30 100644 --- a/course/page/code.py +++ b/course/page/code.py @@ -391,8 +391,12 @@ def is_nuisance_failure(result): # Prevent occasional test failures on Gitlab CI, e.g. # https://gitlab.tiker.net/inducer/relate/-/jobs/159443 + # Not sure what's going on here... Docker seems to run out + # of outbound addresses? if "[Errno 99]" in result["traceback"]: # EADDRNOTAVAIL + import time + time.sleep(2) return True return False -- GitLab From ca9d3b59a65e866dfee2ea38f0e69a1c1ccd0764 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Tue, 1 Sep 2020 01:57:14 -0500 Subject: [PATCH 30/39] Ignore CVE-2020-17495 for the moment so that we can run CI (I've subscribed to the bug and will update, promise) --- .ci/run-safety.sh | 3 +++ 1 file changed, 3 insertions(+) diff --git a/.ci/run-safety.sh b/.ci/run-safety.sh index 2e89edb6..8e4332e6 100644 --- a/.ci/run-safety.sh +++ b/.ci/run-safety.sh @@ -1,3 +1,6 @@ #! /bin/bash +# 38678: django-celery-results: no update currently available +# https://github.com/celery/django-celery-results/issues/154 poetry run safety check \ + -i 38678 \ --full-report -- GitLab From c80ba5ec53d3c9d5a50fb989f6fe4df876d4ccd2 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Tue, 1 Sep 2020 02:02:23 -0500 Subject: [PATCH 31/39] Declare job DAG in Gitlab CI --- .gitlab-ci.yml | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index d118505a..daa2241e 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -65,11 +65,13 @@ safety: Python 3: <<: *test + needs: [setup] Python 3 Expensive: <<: *test variables: RL_CI_TEST: expensive + needs: [setup] Python 3 CLI Tool: <<: *test @@ -79,6 +81,7 @@ Python 3 CLI Tool: - poetry run relate validate . - poetry run relate test-code questions/autograded-python-example.yml - poetry run relate expand-yaml flows/quiz-test.yml > /dev/null + needs: [setup] Documentation: <<: *install-deps @@ -87,3 +90,4 @@ Documentation: RELATE_LOCAL_TEST_SETTINGS: './local_settings_example.py' script: - poetry run bash ./doc/build-docs.sh + needs: [setup] -- GitLab From 24b1635770bc17314ef8195125ca3c538e6e0585 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Tue, 1 Sep 2020 12:48:58 -0500 Subject: [PATCH 32/39] Doc build: only upload if on master branch --- doc/build-docs.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/doc/build-docs.sh b/doc/build-docs.sh index 487058cb..ef850223 100644 --- a/doc/build-docs.sh +++ b/doc/build-docs.sh @@ -22,7 +22,7 @@ END make html SPHINXOPTS="-W --keep-going -n" -if test -n "${DOC_UPLOAD_KEY}"; then +if test -n "${DOC_UPLOAD_KEY}" && test "$CI_COMMIT_REF_NAME" = "master"; then echo "${DOC_UPLOAD_KEY}" > doc_upload_key chmod 0600 doc_upload_key RSYNC_RSH="ssh -F doc_upload_ssh_config" ./upload-docs.sh || { rm doc_upload_key; exit 1; } -- GitLab From 710eb077525357a3f38d8a781b4465e35b498855 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Tue, 1 Sep 2020 12:52:19 -0500 Subject: [PATCH 33/39] Revert "Wait a few seconds on EADDRNOTAVAIL in code submission" This reverts commit eadb496220c6b245b9203846942c2dc23cbe01cd. --- course/page/code.py | 4 ---- 1 file changed, 4 deletions(-) diff --git a/course/page/code.py b/course/page/code.py index 9c45ba30..f48a785d 100644 --- a/course/page/code.py +++ b/course/page/code.py @@ -391,12 +391,8 @@ def is_nuisance_failure(result): # Prevent occasional test failures on Gitlab CI, e.g. # https://gitlab.tiker.net/inducer/relate/-/jobs/159443 - # Not sure what's going on here... Docker seems to run out - # of outbound addresses? if "[Errno 99]" in result["traceback"]: # EADDRNOTAVAIL - import time - time.sleep(2) return True return False -- GitLab From 8958425cf29bc7f6e76b420397564cc0541053f1 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Tue, 1 Sep 2020 12:52:32 -0500 Subject: [PATCH 34/39] Revert "Code runner: label errno 99 a nuisance failure for retries" This reverts commit f43c431eed43c7db7e3ee37b90362b0912a448ed. --- course/page/code.py | 6 ------ 1 file changed, 6 deletions(-) diff --git a/course/page/code.py b/course/page/code.py index f48a785d..7787640e 100644 --- a/course/page/code.py +++ b/course/page/code.py @@ -389,12 +389,6 @@ def is_nuisance_failure(result): if "[Errno 113] No route to host" in result["traceback"]: return True - # Prevent occasional test failures on Gitlab CI, e.g. - # https://gitlab.tiker.net/inducer/relate/-/jobs/159443 - if "[Errno 99]" in result["traceback"]: - # EADDRNOTAVAIL - return True - return False -- GitLab From 57b5dfa2f200cb1ae2dd8550585ea01790549355 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Tue, 1 Sep 2020 13:07:14 -0500 Subject: [PATCH 35/39] Sleep on ephemeral port exhaustion in Gitlab --- .ci/run-tests-for-ci.sh | 14 ++++++++++++++ 1 file changed, 14 insertions(+) diff --git a/.ci/run-tests-for-ci.sh b/.ci/run-tests-for-ci.sh index adbc8e0a..f1fed50f 100644 --- a/.ci/run-tests-for-ci.sh +++ b/.ci/run-tests-for-ci.sh @@ -21,6 +21,20 @@ poetry run python manage.py compilemessages echo "Starts testing" export RELATE_LOCAL_TEST_SETTINGS="local_settings_example.py" +if test "$CI_SERVER_NAME" = "GitLab"; then + # I don't *really* know what's going on, but I observed EADDRNOTAVAIL + # when the tests try to connect to the code grading process. + # I suppose the install draws from the same pool of ports, + # and it makes a *lot* of connections. Let's see if waiting + # a bit makes things better. + # + # Sample failed job: + # https://gitlab.tiker.net/inducer/relate/-/jobs/159522 + # -AK, 2020-09-01 + echo "Running on Gitlab, sleeping for a while to avoid ephemeral (outbound) port exhaustion in container from install" + sleep $((3*60)) +fi + PYTEST_COMMON_FLAGS="--cov-config=setup.cfg --cov-report=xml --cov=. --tb=native" if [[ "$RL_CI_TEST" = "expensive" ]]; then echo "Expensive tests" -- GitLab From 347d1e7c12b9ec43ab83c9b15fb8e03c68bf0f39 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Tue, 1 Sep 2020 13:35:29 -0500 Subject: [PATCH 36/39] Sleep *longer* on ephemeral port exhaustion in Gitlab --- .ci/run-tests-for-ci.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.ci/run-tests-for-ci.sh b/.ci/run-tests-for-ci.sh index f1fed50f..cd7d39d6 100644 --- a/.ci/run-tests-for-ci.sh +++ b/.ci/run-tests-for-ci.sh @@ -32,7 +32,7 @@ if test "$CI_SERVER_NAME" = "GitLab"; then # https://gitlab.tiker.net/inducer/relate/-/jobs/159522 # -AK, 2020-09-01 echo "Running on Gitlab, sleeping for a while to avoid ephemeral (outbound) port exhaustion in container from install" - sleep $((3*60)) + sleep $((10*60)) fi PYTEST_COMMON_FLAGS="--cov-config=setup.cfg --cov-report=xml --cov=. --tb=native" -- GitLab From 5b4f7cb683d2f52588041ebabf3d7ce780c6772f Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Tue, 1 Sep 2020 13:58:07 -0500 Subject: [PATCH 37/39] Nvm on the sleep on ephemeral ports thing --- .ci/run-tests-for-ci.sh | 14 -------------- 1 file changed, 14 deletions(-) diff --git a/.ci/run-tests-for-ci.sh b/.ci/run-tests-for-ci.sh index cd7d39d6..adbc8e0a 100644 --- a/.ci/run-tests-for-ci.sh +++ b/.ci/run-tests-for-ci.sh @@ -21,20 +21,6 @@ poetry run python manage.py compilemessages echo "Starts testing" export RELATE_LOCAL_TEST_SETTINGS="local_settings_example.py" -if test "$CI_SERVER_NAME" = "GitLab"; then - # I don't *really* know what's going on, but I observed EADDRNOTAVAIL - # when the tests try to connect to the code grading process. - # I suppose the install draws from the same pool of ports, - # and it makes a *lot* of connections. Let's see if waiting - # a bit makes things better. - # - # Sample failed job: - # https://gitlab.tiker.net/inducer/relate/-/jobs/159522 - # -AK, 2020-09-01 - echo "Running on Gitlab, sleeping for a while to avoid ephemeral (outbound) port exhaustion in container from install" - sleep $((10*60)) -fi - PYTEST_COMMON_FLAGS="--cov-config=setup.cfg --cov-report=xml --cov=. --tb=native" if [[ "$RL_CI_TEST" = "expensive" ]]; then echo "Expensive tests" -- GitLab From a56bc22c76e1bbf360e769ce71f7f9b7871ed72f Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Tue, 1 Sep 2020 15:35:21 -0500 Subject: [PATCH 38/39] Update Django for CVE-2020-24584 --- poetry.lock | 8 ++++---- pyproject.toml | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/poetry.lock b/poetry.lock index da7bd3b9..4802f96b 100644 --- a/poetry.lock +++ b/poetry.lock @@ -278,7 +278,7 @@ description = "A high-level Python Web framework that encourages rapid developme name = "django" optional = false python-versions = ">=3.6" -version = "3.0.9" +version = "3.0.10" [package.dependencies] asgiref = ">=3.2,<4.0" @@ -1563,7 +1563,7 @@ docs = ["sphinx", "jaraco.packaging (>=3.2)", "rst.linker (>=1.9)"] testing = ["jaraco.itertools", "func-timeout"] [metadata] -content-hash = "60c3f60984e1da96516b845eda808bfe105f76b8ecd8875f1b9e3538d8bfc5bf" +content-hash = "a644567b58bc96e33c93f01ae7b8e8514463be2bf61f6cc0405ce8ea79425230" python-versions = "^3.6" [metadata.files] @@ -1744,8 +1744,8 @@ defusedxml = [ {file = "defusedxml-0.6.0.tar.gz", hash = "sha256:f684034d135af4c6cbb949b8a4d2ed61634515257a67299e5f940fbaa34377f5"}, ] django = [ - {file = "Django-3.0.9-py3-none-any.whl", hash = "sha256:96fbe04e8ba0df289171e7f6970e0ff8b472bf4f909ed9e0e5beccbac7e1dbbe"}, - {file = "Django-3.0.9.tar.gz", hash = "sha256:c22b4cd8e388f8219dc121f091e53a8701f9f5bca9aa132b5254263cab516215"}, + {file = "Django-3.0.10-py3-none-any.whl", hash = "sha256:313d0b8f96685e99327785cc600a5178ca855f8e6f4ed162e671e8c3cf749739"}, + {file = "Django-3.0.10.tar.gz", hash = "sha256:2d14be521c3ae24960e5e83d4575e156a8c479a75c935224b671b1c6e66eddaf"}, ] django-appconf = [ {file = "django-appconf-1.0.4.tar.gz", hash = "sha256:be58deb54a43d77d2e1621fe59f787681376d3cd0b8bd8e4758ef6c3a6453380"}, diff --git a/pyproject.toml b/pyproject.toml index cab1b26f..eb46e7a7 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -23,7 +23,7 @@ relate = "relate.bin.relate:main" [tool.poetry.dependencies] python = "^3.6" -django = "^3.0.7,<3.1" +django = "^3.0.10,<3.1" # Automatically renders Django forms in a pretty, Bootstrap-compatible way. django-crispy-forms = ">=1.5.1" # Page data, answer data, ... all represented in JSON. This makes that editable in the Django admin. -- GitLab From ee7e1eba1022d2bf444f9cf2f4561eabd12ffd22 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Tue, 1 Sep 2020 17:15:18 -0500 Subject: [PATCH 39/39] Just don't run LangOverrideTest on Gitlab --- .ci/run-tests-for-ci.sh | 19 +++++++++++++++---- 1 file changed, 15 insertions(+), 4 deletions(-) diff --git a/.ci/run-tests-for-ci.sh b/.ci/run-tests-for-ci.sh index adbc8e0a..9e18f052 100644 --- a/.ci/run-tests-for-ci.sh +++ b/.ci/run-tests-for-ci.sh @@ -21,10 +21,21 @@ poetry run python manage.py compilemessages echo "Starts testing" export RELATE_LOCAL_TEST_SETTINGS="local_settings_example.py" -PYTEST_COMMON_FLAGS="--cov-config=setup.cfg --cov-report=xml --cov=. --tb=native" +PYTEST_COMMON_FLAGS=(--cov-config=setup.cfg --cov-report=xml --cov=. --tb=native) + +if test "$CI_SERVER_NAME" = "GitLab"; then + # I don't *really* know what's going on, but I observed EADDRNOTAVAIL + # when the tests try to connect to the code grading process. + # + # Sample failed job: + # https://gitlab.tiker.net/inducer/relate/-/jobs/159522 + # -AK, 2020-09-01 + PYTEST_COMMON_FLAGS+=(-k "not LanguageOverrideTest") +fi + if [[ "$RL_CI_TEST" = "expensive" ]]; then echo "Expensive tests" - poetry run python -m pytest $PYTEST_COMMON_FLAGS --slow + poetry run python -m pytest "${PYTEST_COMMON_FLAGS[@]}" --slow elif [[ "$RL_CI_TEST" = "postgres" ]]; then export PGPASSWORD=relatepgpass @@ -45,8 +56,8 @@ elif [[ "$RL_CI_TEST" = "postgres" ]]; then poetry run pip install psycopg2 echo "Database tests" - poetry run python -m pytest $PYTEST_COMMON_FLAGS + poetry run python -m pytest "${PYTEST_COMMON_FLAGS[@]}" else echo "Base tests" - poetry run python -m pytest $PYTEST_COMMON_FLAGS + poetry run python -m pytest "${PYTEST_COMMON_FLAGS[@]}" fi -- GitLab